Source code for blissoda.fluo.parameters.workflows.mosaic_fluoxas_nofit_align

from typing import List

from ..utils.models import MosaicFluoXasParameters

WORKFLOW = "mosaic_fluoxas_nofit_align"




def workflow_inputs(parameters: MosaicFluoXasParameters) -> List[dict]:
    inputs = [
        {
            "name": "filenames",
            "value": parameters.filenames,
            "task_identifier": "PickScanGroups",
        },
        {
            "name": "scan_ranges",
            "value": parameters.scan_ranges,
            "task_identifier": "PickScanGroups",
        },
        {
            "name": "exclude_scans",
            "value": parameters.exclude_scans,
            "task_identifier": "PickScanGroups",
        },
        {
            "name": "group_by_index",
            "value": parameters.group_by_index,
            "task_identifier": "PickScanGroups",
        },
        {
            "name": "output_root_uri",
            "value": parameters.concat_output_root_uri,
            "task_identifier": "ConcatBlissScanGroups",
        },
        {
            "name": "output_root_uri",
            "value": parameters.output_root_uri,
            "task_identifier": "ExtractRawCountersStack",
        },
        {
            "name": "axes_units",
            "value": parameters.axis_units,
            "task_identifier": "ConcatBlissScanGroups",
        },
        {
            "name": "virtual_axes",
            "value": parameters.virtual_axes,
            "task_identifier": "ConcatBlissScanGroups",
        },
        {
            "name": "resolution",
            "value": parameters.resolution,
            "task_identifier": "RegridXrfResultsStack",
        },
        {
            "name": "axes_units",
            "value": parameters.axis_units,
            "task_identifier": "RegridXrfResultsStack",
        },
        {
            "name": "stack_positioner",
            "value": parameters.stack_axis,
            "task_identifier": "RegridXrfResultsStack",
        },
        {
            "name": "positioners",
            "value": parameters.real_axes,
            "task_identifier": "RegridXrfResultsStack",
        },
        {
            "name": "ignore_positioners",
            "value": parameters.ignore_axes,
            "task_identifier": "RegridXrfResultsStack",
        },
        {
            "name": "reference_stack",
            "value": parameters.align_counter,
            "task_identifier": "Reg2DPreEvaluation",
        },
        {
            "name": "skip",
            "value": parameters.skip_pre_evaluation,
            "task_identifier": "Reg2DPreEvaluation",
        },
        {
            "name": "transformation_type",
            "value": parameters.transformation_type,
            "task_identifier": "Reg2DIntensities",
        },
        {
            "name": "block_size",
            "value": parameters.block_size,
            "task_identifier": "Reg2DIntensities",
        },
        {
            "name": "mapper",
            "value": parameters.mapper,
            "task_identifier": "Reg2DIntensities",
        },
        {
            "name": "mapper_options",
            "value": parameters.mapper_options,
            "task_identifier": "Reg2DIntensities",
        },
        {
            "name": "skip",
            "value": parameters.skip_post_evaluation,
            "task_identifier": "Reg2DPostEvaluation",
        },
        {
            "name": "crop",
            "value": parameters.align_crop,
            "task_identifier": "Reg2DTransform",
        },
        {
            "name": "interpolation_order",
            "value": parameters.interpolation_order,
            "task_identifier": "Reg2DTransform",
        },
    ]

    return inputs